Changes between Initial Version and Version 1 of SequencingIntersection


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Timestamp:
Feb 4, 2011 3:58:42 PM (6 years ago)
Author:
Patrick
Comment:

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  • SequencingIntersection

    v1 v1  
     1= Sequencing Intersection =
     2Status: Beta Authors: Patrick Deelen, Morris Swertz
     3
     4Tool that can create an intersection of variants that are shared by multiple samples. This tool is used to assess if there are variants that are shared among family members.
     5
     6== Input ==
     7 * CNS / Q20 (from BGI)
     8 * VCF
     9
     10== Ouput ==
     11 * Per group/family a file with the shared variants
     12 * Excel file with the variants that are shared with in groups/families and how often a variant is shared.
     13
     14== Option ==
     15By default QCed data is used. It is possible to ignore a bad QC in a sample if the alleles are identical in the other members of a family that are of prober quality
     16
     17== Future ==
     18Add support to also create intersection based on indel data