wiki:SequencingIntersection

Sequencing Intersection

Status: Beta Authors: Patrick Deelen, Morris Swertz

Tool that can create an intersection of variants that are shared by multiple samples. This tool is used to assess if there are variants that are shared among family members.

Input

  • CNS / Q20 (from BGI)
  • VCF

Ouput

  • Per group/family a file with the shared variants
  • Excel file with the variants that are shared with in groups/families and how often a variant is shared.

Option

By default QCed data is used. It is possible to ignore a bad QC in a sample if the alleles are identical in the other members of a family that are of prober quality

Future

Add support to also create intersection based on indel data

Last modified 7 years ago Last modified on Feb 4, 2011 3:58:42 PM