wiki:BIOS_ackn

Version 1 (modified by Rick, 11 months ago) (diff)

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  1. Mill J, Heijmans BT. From promises to practical strategies in epigenetic epidemiology. Nat Rev Genet 2013; 14: 585-594 (http://www.ncbi.nlm.nih.gov/pubmed/23817309)
  1. Westra H-J, Peters MJ, Esko T, Yaghootkar H, Schurmann C, Kettunen J et al. Systematic identification of trans eQTLs as putative drivers of known disease associations. Nat Genet 2013; 45: 1238-1243
  1. Wright FA, Sullivan PF, Brooks AI, Zou F, Sun W, Xia K et al. Heritability and genomics of gene expression in peripheral blood. Nat Genet 2014; 46: 430-437
  1. Jansen R, Penninx BWJH, Madar V, Xia K, Milaneschi Y, Hottenga JJ et al. Gene expression in major depressive disorder. Mol Psychiatry 2015. doi:10.1038/mp.2015.57
  1. Luijk R, Goeman JJ, Slagboom EP, Heijmans BT, van Zwet EW. An alternative approach to multiple testing for methylation QTL mapping reduces the proportion of falsely identified CpGs?. Bioinformatics 2015; 31: 340-345
  1. van Iterson M, Tobi EW, Slieker RC, Hollander W den, Luijk R, Slagboom PE et al. MethylAid?: visual and interactive quality control of large Illumina 450k datasets. Bioinformatics 2014; 30: 3435-3437
  1. Shah S, Bonder MJ, Marioni RE, Zhu Z, McRae? AF, Zhernakova A et al. Improving Phenotypic Prediction by Combining Genetic and Epigenetic Associations. Am J Hum Genet 2015; 97: 75- 85
  1. Bonder MJ, Kasela S, Kals M, Tamm R, Lokk K, Barragan I et al. Genetic and epigenetic regulation of gene expression in fetal and adult human livers. BMC Genomics 2014; 15: 860 (http://www.ncbi.nlm.nih.gov/pubmed/25282492)
  1. Dekkers KF, Slagboom PE, Jukema JW, Heijmans BT. The multifaceted interplay between lipids and epigenetics. Curr Opin Lipidol. 2016;27:288-94.
  1. Dekkers KF, van Iterson M, Slieker RC, Moed MH, Bonder MJ, van Galen M, Mei H,Zhernakova DV, van den Berg LH, Deelen J, van Dongen J, van Heemst D, Hofman A,Hottenga JJ, van der Kallen CJ, Schalkwijk CG, Stehouwer CD, Tigchelaar EF,Uitterlinden AG, Willemsen G, Zhernakova A, Franke L, 't Hoen PA, Jansen R, van Meurs J, Boomsma DI, van Duijn CM, van Greevenbroek MM, Veldink JH, Wijmenga C; BIOS Consortium, van Zwet EW, Slagboom PE, Jukema JW, Heijmans BT. Blood lipids influence DNA methylation in circulating cells. Genome Biol. 2016;17:138.
  1. van Dongen J, Nivard MG, Willemsen G, Hottenga JJ, Helmer Q, Dolan CV, EhliEA, Davies GE, van Iterson M, Breeze CE, Beck S; BIOS Consortium, Suchiman HE,Jansen R, van Meurs JB, Heijmans BT, Slagboom PE, Boomsma DI. Genetic and environmental influences interact with age and sex in shaping the human methylome. Nat Commun. 2016;7:11115.
  1. Ricaño-Ponce I, Zhernakova DV, Deelen P, Luo O, Li X, Isaacs A, Karjalainen J, Di Tommaso J, Borek ZA, Zorro MM, Gutierrez-Achury J, Uitterlinden AG, Hofman A, van Meurs J; BIOS Consortium; Lifelines Cohort Study, Netea MG, Jonkers IH, Withoff S, van Duijn CM, Li Y, Ruan Y, Franke L, Wijmenga C, Kumar V. Refined mapping of autoimmune disease associated genetic variants with gene expression suggests an important role for non-coding RNAs. J Autoimmun. 2016 Apr;68:62-74. doi:
  1. Ligthart S, Steenaard RV, Peters MJ, van Meurs JB, Sijbrands EJ, Uitterlinden AG, Bonder MJ; BIOS consortium, Hofman A, Franco OH, Dehghan A. Tobacco smoking is associated with DNA methylation of diabetes susceptibility genes. Diabetologia. 2016 May;59(5):998-1006.
  1. Baselmans BM, van Dongen J, Nivard MG, Lin BD; BIOS Consortium, Zilhão NR,Boomsma DI, Bartels M. Epigenome-Wide Association Study of Wellbeing. Twin Res Hum Genet. 2015 Dec;18(6):710-9.
  1. van Dongen J, Nivard MG, Baselmans BM, Zilhão NR, Ligthart L; BIOS Consortium, Heijmans BT, Bartels M, Boomsma DI. Epigenome-Wide Association Study of Aggressive Behavior. Twin Res Hum Genet. 2015 Dec;18(6):686-98.
  1. Zilhão NR, Padmanabhuni SS, Pagliaroli L, Barta C; BIOS Consortium, Smit DJ, Cath D, Nivard MG, Baselmans BM, van Dongen J, Paschou P, Boomsma DI. Epigenome-Wide Association Study of Tic Disorders. Twin Res Hum Genet. 2015

Dec;18(6):699-709.

  1. Kato N, Loh M, Takeuchi F, Verweij N, Wang X, Zhang W, Kelly TN, Saleheen D, Lehne B, Mateo Leach I, Drong AW, Abbott J, Wahl S, Tan ST, Scott WR, Campanella G, Chadeau-Hyam M, Afzal U, Ahluwalia TS, Bonder MJ, Chen P, Dehghan A, Edwards TL, Esko T, Go MJ, Harris SE, Hartiala J, Kasela S, Kasturiratne A, Khor CC, Kleber ME, Li H, Mok ZY, Nakatochi M, Sapari NS, Saxena R, Stewart AF, Stolk L, Tabara Y, Teh AL, Wu Y, Wu JY, Zhang Y, Aits I, Da Silva Couto Alves A, Das S, Dorajoo R, Hopewell JC, Kim YK, Koivula RW, Luan J, Lyytikäinen LP, Nguyen QN, Pereira MA, Postmus I, Raitakari OT, Bryan MS, Scott RA, Sorice R, Tragante V, Traglia M, White J, Yamamoto K, Zhang Y, Adair LS, Ahmed A, Akiyama K, Asif R, Aung T, Barroso I, Bjonnes A, Braun TR, Cai H, Chang LC, Chen CH, Cheng CY, Chong YS, Collins R, Courtney R, Davies G, Delgado G, Do LD, Doevendans PA, Gansevoort RT, Gao YT, Grammer TB, Grarup N, Grewal J, Gu D, Wander GS, Hartikainen AL, Hazen SL, He J, Heng CK, Hixson JE, Hofman A, Hsu C, Huang W, Husemoen LL, Hwang JY, Ichihara S, Igase M, Isono M, Justesen JM, Katsuya T, Kibriya MG, Kim YJ, Kishimoto M, Koh WP, Kohara K, Kumari M, Kwek K, Lee NR, Lee J, Liao J, Lieb W, Liewald DC, Matsubara T, Matsushita Y, Meitinger T, Mihailov E, Milani L, Mills R, Mononen N, Müller-Nurasyid M, Nabika T, Nakashima E, Ng HK, Nikus K, Nutile T,Ohkubo T, Ohnaka K, Parish S, Paternoster L, Peng H, Peters A, Pham ST, Pinidiyapathirage MJ, Rahman M, Rakugi H, Rolandsson O, Rozario MA, Ruggiero D, Sala CF, Sarju R, Shimokawa K, Snieder H, Sparsø T, Spiering W, Starr JM, Stott DJ, Stram DO, Sugiyama T, Szymczak S, Tang WH, Tong L, Trompet S, Turjanmaa V, Ueshima H, Uitterlinden AG, Umemura S, Vaarasmaki M, van Dam RM, van Gilst WH, van Veldhuisen DJ, Viikari JS, Waldenberger M, Wang Y, Wang A, Wilson R, Wong TY, Xiang YB, Yamaguchi S, Ye X, Young RD, Young TL, Yuan JM, Zhou X, Asselbergs FW, Ciullo M, Clarke R, Deloukas P, Franke A, Franks PW, Franks S, Friedlander Y, Gross MD, Guo Z, Hansen T, Jarvelin MR, Jørgensen T, Jukema JW, Kähönen M, Kajio H, Kivimaki M, Lee JY, Lehtimäki T, Linneberg A, Miki T, Pedersen O, Samani NJ, Sørensen TI, Takayanagi R, Toniolo D; BIOS-consortium; CARDIo GRAMplusCD; LifeLines? Cohort Study; InterAct? Consortium, Ahsan H, Allayee H, Chen YT, Danesh J, Deary IJ, Franco OH, Franke L, Heijman BT, Holbrook JD, Isaacs A, Kim BJ, Lin X, Liu J, März W, Metspalu A, Mohlke KL, Sanghera DK, Shu XO, van Meurs JB,Vithana E, Wickremasinghe AR, Wijmenga C, Wolffenbuttel BH, Yokota M, Zheng W,Zhu D, Vineis P, Kyrtopoulos SA, Kleinjans JC, McCarthy? MI, Soong R, Gieger C, Scott J, Teo YY, He J, Elliott P, Tai ES, van der Harst P, Kooner JS, Chambers JC. Trans-ancestry genome-wide association study identifies 12 genetic loci influencing blood pressure and implicates a role for DNA methylation. Nat Genet.2015 Nov;47(11):1282-93.
  1. Shah S, Bonder MJ, Marioni RE, Zhu Z, McRae? AF, Zhernakova A, Harris SE, Liewald D, Henders AK, Mendelson MM, Liu C, Joehanes R, Liang L; BIOS Consortium, Levy D, Martin NG, Starr JM, Wijmenga C, Wray NR, Yang J, Montgomery GW, Franke L, Deary IJ, Visscher PM. Improving Phenotypic Prediction by Combining Genetic and Epigenetic Associations. Am J Hum Genet. 2015 Jul 2;97(1):75-85.
  1. Slieker RC, van Iterson M, Luijk R, Beekman M, Zhernakova DV, Moed MH, Mei H, Deelen P, Bonder MJ, Zhernakova A, Uitterlinden AG, Tigchelaar EF, Stehouwer DCA, Schalkwijk CG, van der Kallen CJH, Hofman A, van Heemst D, de Geus EJ, van Dongen J, Deelen J, van den Berg LH, van Meurs J, Jansen R, 't Hoen PAC, Franke L, Wijmenga C, Veldink JH, Swertz MA, van Greevenbroek MMJ, van Duijn CM, Boomsma DI, BIOS consortium, Slagboom PE, Heijmans BT. Age-related accrual of methylomic variability is linked to fundamental ageing mechanisms. Genome Biol 2016 (in press).

& BioRXiv: http://biorxiv.org/content/early/2015/11/30/033217 http://biorxiv.org/content/early/2015/12/01/033084.1 http://biorxiv.org/content/early/2016/05/27/055772