Changes between Version 2 and Version 3 of BIOS_SampleBlacklist2


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Timestamp:
Sep 19, 2016 5:13:38 PM (15 months ago)
Author:
jamverlouw
Comment:

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  • BIOS_SampleBlacklist2

    v2 v3  
    1111
    1212== Contaminations ==
    13 No contaminations have been detected for CODAM, RS, LL. Only outlier samles in heterozygosity rates have already been spotted as mixups. See: http://www.bbmriwiki.nl/wiki/FgSampleBlacklist [[BR]] The list of LLS samples that have high heterozygosity rate based on genotypes called from RNAseq data (all of them have low genotype concordance - see the list above):[[BR]] BD1NYRACXX-2-27[[BR]]BC1KBKACXX-5-8[[BR]]BC1KBKACXX-5-6[[BR]]BD24PGACXX-7-10[[BR]]BC1KBKACXX-5-3[[BR]]BC1KBKACXX-5-7[[BR]]BD1NW4ACXX-8-5[[BR]]BC1KBKACXX-5-1[[BR]]BD1NYRACXX-2-16[[BR]]AD1NE2ACXX-4-22[[BR]]BC1KBKACXX-5-2[[BR]]BC1KBKACXX-5-5[[BR]]BD1NYRACXX-3-1[[BR]]BD1NYRACXX-4-19[[BR]]AD1NFNACXX-4-8[[BR]]BC1KBKACXX-5-4[[BR]]AD1NFNACXX-5-15
     13No contaminations have been detected for CODAM, RS, LL. Only outlier samles in heterozygosity rates have already been spotted as mixups. See: http://www.bbmriwiki.nl/wiki/BIOS_SampleBlacklist [[BR]] The list of LLS samples that have high heterozygosity rate based on genotypes called from RNAseq data (all of them have low genotype concordance - see the list above):[[BR]] BD1NYRACXX-2-27[[BR]]BC1KBKACXX-5-8[[BR]]BC1KBKACXX-5-6[[BR]]BD24PGACXX-7-10[[BR]]BC1KBKACXX-5-3[[BR]]BC1KBKACXX-5-7[[BR]]BD1NW4ACXX-8-5[[BR]]BC1KBKACXX-5-1[[BR]]BD1NYRACXX-2-16[[BR]]AD1NE2ACXX-4-22[[BR]]BC1KBKACXX-5-2[[BR]]BC1KBKACXX-5-5[[BR]]BD1NYRACXX-3-1[[BR]]BD1NYRACXX-4-19[[BR]]AD1NFNACXX-4-8[[BR]]BC1KBKACXX-5-4[[BR]]AD1NFNACXX-5-15
    1414
    1515== Overview RNAseq data April 14th 2014 ==